Buch, Englisch, 1472 Seiten, Format (B × H): 220 mm x 287 mm, Gewicht: 4023 g
ISBN: 978-1-119-00488-2
Verlag: Wiley
Bacteria in various habitats are subject to continuously changing environmental conditions, such as nutrient deprivation, heat and cold stress, UV radiation, oxidative stress, dessication, acid stress, nitrosative stress, cell envelope stress, heavy metal exposure, osmotic stress, and others. In order to survive, they have to respond to these conditions by adapting their physiology through sometimes drastic changes in gene expression. In addition they may adapt by changing their morphology, forming biofilms, fruiting bodies or spores, filaments, Viable But Not Culturable (VBNC) cells or moving away from stress compounds via chemotaxis. Changes in gene expression constitute the main component of the bacterial response to stress and environmental changes, and involve a myriad of different mechanisms, including (alternative) sigma factors, bi- or tri-component regulatory systems, small non-coding RNA’s, chaperones, CHRIS-Cas systems, DNA repair, toxin-antitoxin systems, the stringent response, efflux pumps, alarmones, and modulation of the cell envelope or membranes, to name a few. Many regulatory elements are conserved in different bacteria; however there are endless variations on the theme and novel elements of gene regulation in bacteria inhabiting particular environments are constantly being discovered. Especially in (pathogenic) bacteria colonizing the human body a plethora of bacterial responses to innate stresses such as pH, reactive nitrogen and oxygen species and antibiotic stress are being described. An attempt is made to not only cover model systems but give a broad overview of the stress-responsive regulatory systems in a variety of bacteria, including medically important bacteria, where elucidation of certain aspects of these systems could lead to treatment strategies of the pathogens. Many of the regulatory systems being uncovered are specific, but there is also considerable “cross-talk” between different circuits.
Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria is a comprehensive two-volume work bringing together both review and original research articles on key topics in stress and environmental control of gene expression in bacteria.
Volume One contains key overview chapters, as well as content on one/two/three component regulatory systems and stress responses, sigma factors and stress responses, small non-coding RNAs and stress responses, toxin-antitoxin systems and stress responses, stringent response to stress, responses to UV irradiation, SOS and double stranded systems repair systems and stress, adaptation to both oxidative and osmotic stress, and desiccation tolerance and drought stress.
Volume Two covers heat shock responses, chaperonins and stress, cold shock responses, adaptation to acid stress, nitrosative stress, and envelope stress, as well as iron homeostasis, metal resistance, quorum sensing, chemotaxis and biofilm formation, and viable but not culturable (VBNC) cells.
Covering the full breadth of current stress and environmental control of gene expression studies and expanding it towards future advances in the field, these two volumes are a one-stop reference for (non) medical molecular geneticists interested in gene regulation under stress.
Autoren/Hrsg.
Fachgebiete
Weitere Infos & Material
VOLUME 1
Preface, xiii
Acknowledgements, xiv
List of contributors, xv
1 Introduction, 1
Frans J. de Bruijn
Section 2: Key overview chapters, 3
2.1 Stress-induced changes in transcript stability, 5
Dvora Biran and Eliora Z. Ron
2.2 StressChip for monitoring microbial stress response in the environment, 9
Joy D. Van Nostrand, Aifen Zhou and Jizhong Zhou
2.3 A revolutionary paradigm of bacterial genome regulation, 23
Akira Ishihama
2.4 Role of changes in s70-driven transcription in adaptation of E. coli to conditions of stress or starvation, 37
Umender K. Sharma
2.5 The distribution and spatial organization of RNA polymerase in Escherichia coli: growth rate regulation and stress responses, 48
Ding Jun Jin, Cedric Cagliero, Jerome Izard, Carmen Mata Martin, and Yan Ning Zhou
2.6 The ECF classification: a phylogenetic reflection of the regulatory diversity in the extracytoplasmic function s factor protein family, 64
Daniela Pinto andThorsten Mascher
2.7 Toxin–antitoxin systems in bacteria and archaea, 97
Yoshihiro Yamaguchi and Masayori Inouye
2.8 Bacterial sRNAs: regulation in stress, 108
Marimuthu Citartan, Carsten A. Raabe, Chee-Hock Hoe, Timofey S. Rozhdestvensky, andThean-Hock Tang
2.9 Bacterial stress responses as determinants of antimicrobial resistance, 115
Michael Fruci and Keith Poole
2.10 Transposable elements: a toolkit for stress and environmental adaptation in bacteria, 137
Anna Ullastres, Miriam Merenciano, Lain Guio, and Josefa González
2.11 CRISPR–Cas system: a new paradigm for bacterial stress response through genome rearrangement, 146
Joseph A. Hakim, Hyunmin Koo, Jan D. van Elsas, Jack T. Trevors, and Asim K. Bej
2.12 The copper metallome in prokaryotic cells, 161
Christopher Rensing, Hend A. Alwathnani, and Sylvia F. McDevitt
2.13 Ribonucleases as modulators of bacterial stress response, 174
Cátia Bárria, Vánia Pobre, Afonso M. Bravo, and Cecília M. Arraiano
2.14 Double-strand-break repair, mutagenesis, and stress, 185
Elizabeth Rogers, Raul Correa, Brittany Barreto, María Angélica Bravo Núñez, P.J. Minnick, Diana Vera Cruz, Jun Xia, P.J. Hastings, and Susan M. Rosenberg
2.15 Sigma factor competition in Escherichia coli: kinetic and thermodynamic perspectives, 196
Kuldeepkumar Ramnaresh Gupta and Dipankar Chatterji
2.16 Iron homeostasis and iron–sulfur cluster assembly in Escherichia coli, 203
Huangen Ding
2.17 Mechanisms underlying the antimicrobial capacity of metals, 215
Joe A. Lemire and Raymond J. Turner
2.18 Acyl-homoserine lactone-based quorum sensing in members of the marine bacterial Roseobacter clade: complex cell-to-cell communication controls multiple physiologies, 225
Alison Buchan, April Mitchell,W. Nathan Cude, and Shawn Campagna
2.19 Native and synthetic gene regulation to nitrogen limitation stress, 234
J örg Schumacher
Section 3: One-, two-, and three-component regulatory systems and stress responses, 247
3.1 Two-component systems that control the expression of aromatic hydrocarbon degradation pathways, 249\
Tino Krell
3.2 Cross-talk of global regulators in Streptomyces, 257
Juan F. Martín, Fernando Santos-Beneit, Alberto Sola-Landa, and Paloma Liras
3.3 NO–H-NOX-regulated two-component signaling, 268
Dhruv P. Arora, Sandhya Muralidharan, and Elizabeth M. Boon
3.4 The two-component CheY system in the chemotaxis of Sinorhizobium meliloti, 277
Martin Haslbeck
3.5 Stimulus perception by histidine kinases, 282
Hannah Schramke, Yang Wang, Ralf Heermann, and Kirsten Jung
Section 4: Sigma factors and stress responses, 301
4.1 The extracytoplasmic function sigma factor EcfO protects Bacteroides fragilis against oxidative stress, 303
Ivan C. Ndamukong, Samantha Palethorpe, Michael Betteken, and C. Jeffrey Smith
4.2 Regulation of energy metabolism by the extracytoplasmic function (ECF) s factors of Arcobacter butzleri, 311
Irati Martinez-Malaxetxebarria, Rudy Muts, Linda van Dijk, Craig T. Parker, William G. Miller, Steven Huynh,Wim Gaastra, Jos P.M. van Putten, Aurora Fernandez-Astorga, and Marc M.S.M Wösten
4.3 Extracytoplasmic function sigma factors and stress responses in Corynebacterium pseudotuberculosis, 321
Thiago L.P. Castro, Nubia Seyffert, Anne C. Pinto, Artur Silva, Vasco Azevedo, and Luis G.C. Pacheco
4.4 The complex roles and regulation of stress response s factors in Streptomyces coelicolor, 328
Jan Kormanec, Beatrica Sevcikova, Renata Novakova, Dagmar Homerova, Bronislava Rezuchova, and Erik Mingyar
4.5 Proteolytic activation of extra cytoplasmic function (ECF) s factors, 344
JessicaL. Hastie and Craig D. Ellermeier
4.6 The ECF family sigma factor sH in Corynebacterium glutamicum controls the thiol-oxidative stress response, 352
Tobias Busche and Jörn Kalinowski
4.7 Posttranslational regulation of antisigma factors of RpoE: a comparison between the Escherichia coli and Pseudomonas aeruginosa systems, 361
Sundar Pandey, Kyle L. Martins, and Kalai Mathee
Section 5: Small noncoding RNAs and stress responses, 369
5.1 Bacterial small RNAs in mixed regulatory circuits, 371
Jonathan Jagodnik, DenisThieffry, and Maude Guillier
5.2 Role of small RNAs in Pseudomonas aeruginosa virulence and adaptation, 383
Hansi Kumari, Deepak Balasubramanian, and Kalai Mathee
5.3 Physiological effects of posttranscriptional regulation by the small RNA SgrS during metabolic stress in
Escherichia coli, 393
Gregory R. Richards
5.4 Three rpoS-activating small RNAs in pathways contributing to acid resistance of Escherichia coli, 402
Geunu Bak, Kook Han, Daun Kim, Kwang-sun Kim, and Younghoon Lee
